Cybertaxonomist

Entomology Department, Natural History Museum, Cromwell Road, London, SW7 5BD, U.K.

E-mail: vince@vsmith.info (preferred) or v.smith@nhm.ac.uk (official), iChat Video Conferencing: vsmithuk@mac.com (by invitation) Tel: +44 (0) 207 942 5127, Fax: +44 (0) 207 942 5661, Skype: vsmithuk


I am a research scientist at the Natural History Museum, London. My official title is 'cybertaxonomist,' which means I apply computer technology and the web to the study of biodiversity. When I am not doing this, I work on the evolution of parasitic lice (Insecta: Phthiraptera). You can track my research interests and activities through my blog, publications, presentations, reading list, calendar, and my twitter feed.

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Happy 150th Birthday Natural Selection!

Today (July 1st 2008) marks an important anniversary – the 150th birthday of the first public announcement on natural selection. On July 1st 1858 Charles Lyell and Joseph Hooker read out an essay by Alfred Russell Wallace and two unpublished excerpts from Charles Darwin’s writings at meeting of the Linnean Society of London. One month later these documents were published together in the Society's journal. To mark this seminal event in the history of biology, my friend and colleague George Beccaloni has written an essay that outlines the background to this discovery and some of the controversy that followed. The definitive version of this essay is available from the Wallace Fund website, but George has allowed me to post a copy here.

iNaturalist.org

Rod Page recently alerted me to iNaturalist. This is a very beautiful website that invites you to “record what you see in nature, meet other nature lovers, and learn about the natural world”. It is essentially a mashup of content from Wikipedia and flickr, pinned around the Catalogue of Life classification. Users can submit their own observation data linked with photos through their flickr account, and build life lists of the species they have seen. There are Google Map mashups and a neat time-line that allows users to see the date of their observations (something that would be vital for birders). You can also submit requests for species identifications through a forum, along the lines of the flickr group “ID Please”.

SlideShare fame!

A couple of my presentations (as of May 12, 08) have been featured on the front page of the SlideShare website. They have chosen a recent one I gave as part of the Voyage of Discovery lecture series at the NHM, and an old one on the Scratchpad project. After messing about with SlideShare and Google Docs I decided to opt for SlideShare.

SciFoo Camp 2008!

Wow – I got an invite to Nature and O’Reilly’s Science Foo camp 2008! Without question my experiences last year led me to conclude that this was simply the best science gathering ever. To get reinvited back is a real honor. This unconference brings together people working on the bleeding edge of their fields, who are helping to define the future of science, art and technology. The eclectic mix of invitees dynamically build a schedule over the course of the meeting, which (as in previous years) is held over three days this August at Googleplex in Mountainview, CA. As George Dyson noted from last years experience, the resulting schedule presents you with "the impossible choice" of deciding which sessions to attend.

Myrsidea vincesmithi

Roger Price, Kevin Johnson and Bob Dalgleish have done me the honor of naming a second new louse species after me. This compliments Neopsittaconirmus vincesmithi (suborder Ischnocera), which was named after me late last year from Bourke's parrot (Neopsephotus bourkii).

Old Bailey online

The complete proceedings of London’s Central Criminal Court (the Old Bailey) have recently gone online. This fantastic website allows users to view the details of almost 200,000 criminal trials held at the court from 1674 to 1913. I have already spent several hours browsing the site! Since this digitization project has many parallels with the Biodiversity Heritage Library (a project to scan the literature describing all 1.8 million known species) I thought I’d compare the two:

EOL Meeting and Report

Mid-April I attended the first review of the Encyclopedia of Life Biodiversity Informatics Group (BIG). This is the team based at the Marine Biological Laboratory, Woods Hole that is charged with delivering the web component of the Encyclopedia of Life project. As a member of EOL’s Informatics Advisory Group (IAG) we were present to take stock of the bioinformatics component one year in to this ten-year project. The review culminated in report that highlights priorities for BIG in the coming months. Rod Page sets out the tone of this review inEOL’s official blog, and I hope that the full document will be publicly available soon. In the mean time here are a few personal impressions based on the major themes from the meeting:

Spring Clean

This site is undergoing a much needed spring clean. I’m also linking in an a few new features from various Web apps I have been using over the past few months. Here is a list of the changes:

Scratchpad Panels

Panels

As part of the Scratchpad program of work, we have been using the Drupal “Panels” module as a mechanism to assists users in instantly building and curating content in their sites. The video below provides a quick overview of how we have been doing this:

Book of Life (sort of) debuts!

The Encyclopedia of Life is here (well sort of). The lucky few who managed to get through the traffic are treated to 25 "exemplar" pages illustrating the type of content EOL aspires to get for all species; thirty thousand less detailed pages (thanks largely to FishBase); and a million stubs (courtesy of Species-2000). By chance I happened to be running a lecture and practical on launch day as part of the Natural History Museum's MSc course in taxonomy and biodiversity. The lab was on "Computerized Identification" and provided a perfect opportunity to get some feedback on the first release from 25 web savvy students . Because this was on the morning (GMT) of EOL's launch day, we had unfettered access to the site before America woke up and EOL's servers fell over.

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